{ "_id": "6a10a938acfb0bcc41cbe722", "Package": "SDLfilter", "Type": "Package", "Title": "Filtering and Assessing the Sample Size of Tracking Data", "Version": "2.3.3", "Date": "2023-11-07", "Author": "Takahiro Shimada", "Maintainer": "Takahiro Shimada ", "Description": "Functions to filter GPS/Argos locations, as well as\nassessing the sample size for the analysis of animal\ndistributions. The filters remove temporal and spatial\nduplicates, fixes located at a given height from estimated high\ntide line, and locations with high error as described in\nShimada et al. (2012) and Shimada et\nal. (2016) . Sample size for the\nanalysis of animal distributions can be assessed by the\nconventional area-based approach or the alternative\nprobability-based approach as described in Shimada et al.\n(2021) .", "License": "GPL-2 | file LICENSE", "URL": "https://github.com/TakahiroShimada/SDLfilter", "BugReports": "https://github.com/TakahiroShimada/SDLfilter/issues", "LazyData": "true", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibicu-dev libjpeg-dev libpng-dev libssl-dev libproj-dev\nlibsqlite3-dev libudunits2-dev", "Repository": "https://takahiroshimada.r-universe.dev", "Date/Publication": "2023-11-09 23:23:27 UTC", "RemoteUrl": "https://github.com/takahiroshimada/sdlfilter", "RemoteRef": "HEAD", "RemoteSha": "82e483a7e936ffecbb1ca96a20fe3aa5eb7f7687", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-22 18:51:44 UTC", "User": "root" }, "MD5sum": "575f7e2dda983f184e9451bccfde482a", "_user": "takahiroshimada", "_type": "src", "_file": "SDLfilter_2.3.3.tar.gz", "_fileid": "eaffcb78a51f17815b2765d5d7a0f26d2178a9d51897a482ae426932cf84ca1a", "_filesize": 993926, "_sha256": "eaffcb78a51f17815b2765d5d7a0f26d2178a9d51897a482ae426932cf84ca1a", "_created": "2026-05-22T18:51:44.000Z", "_published": "2026-05-22T19:06:32.593Z", "_distro": "noble", "_jobs": [ { "job": 77443261040, "time": 184, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7168179887" }, { "job": 77443261037, "time": 189, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7168180463" }, { "job": 77443261036, "time": 173, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7168271763" }, { "job": 77443261018, "time": 144, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7168316309" }, { "job": 77442674535, "time": 228, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7168069582" }, { "job": 77443261009, "time": 134, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7168163687" }, { "job": 77443261058, "time": 147, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7168169731" }, { "job": 77443261049, "time": 114, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7168159877" }, { "job": 77443261054, "time": 128, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7168163990" } ], "_buildurl": "https://github.com/r-universe/takahiroshimada/actions/runs/26273384034", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/takahiroshimada/sdlfilter", "_commit": { "id": "82e483a7e936ffecbb1ca96a20fe3aa5eb7f7687", "author": "TakahiroShimada ", "committer": "TakahiroShimada ", "message": "Ver 2.3.3 update #6\n", "time": 1699572207 }, "_maintainer": { "name": "Takahiro Shimada", "email": "taka.shimada@gmail.com", "login": "takahiroshimada", "twitter": "@GoWithTheTrack", "description": "", "uuid": 10124038 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "ggplot2", "role": "Depends" }, { "package": "geosphere", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "gridExtra", "role": "Imports" }, { "package": "ggmap", "role": "Imports" }, { "package": "maps", "role": "Imports" }, { "package": "pracma", "role": "Imports" }, { "package": "lubridate", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "emmeans", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "sf", "role": "Imports" }, { "package": "stars", "role": "Imports" }, { "package": "ggspatial", "role": "Imports" } ], "_owner": "takahiroshimada", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 7, "_contributors": [ { "user": "takahiroshimada", "count": 24, "uuid": 10124038 } ], "_userbio": { "uuid": 10124038, "type": "user", "name": "Takahiro Shimada" }, "_downloads": { "count": 324, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SDLfilter" }, "_devurl": "https://github.com/takahiroshimada/sdlfilter", "_searchresults": 18, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/SDLfilter.html", "manual.pdf" ], "_homeurl": "https://github.com/takahiroshimada/sdlfilter", "_realowner": "takahiroshimada", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2018-02-08" }, { "version": "1.1.0", "date": "2018-04-28" }, { "version": "1.1.1", "date": "2018-06-20" }, { "version": "1.2.0", "date": "2019-02-18" }, { "version": "1.2.1", "date": "2019-02-27" }, { "version": "2.0.0", "date": "2020-05-04" }, { "version": "2.0.1", "date": "2020-07-05" }, { "version": "2.1.0", "date": "2021-04-03" }, { "version": "2.1.1", "date": "2021-07-20" }, { "version": "2.1.2", "date": "2021-11-02" }, { "version": "2.2.0", "date": "2022-01-12" }, { "version": "2.2.1", "date": "2022-05-24" }, { "version": "2.3.0", "date": "2022-10-14" }, { "version": "2.3.1", "date": "2023-01-16" }, { "version": "2.3.2", "date": "2023-04-17" }, { "version": "2.3.3", "date": "2023-11-10" } ], "_exports": [ "asymptote", "boot_area", "boot_overlap", "combn_overlap", "ddfilter", "ddfilter_loop", "ddfilter_speed", "depthfilter", "distfilter", "dupfilter", "dupfilter_exact", "dupfilter_qi", "dupfilter_space", "dupfilter_time", "percent_vol", "to_map", "track_param", "vmax", "vmaxlp" ], "_datasets": [ { "name": "Australia", "title": "A map of Australia", "object": "Australia", "class": [ "data.frame" ], "fields": [ "long", "lat", "order", "hole", "piece", "group", "id" ], "rows": 17138, "table": true, "tojson": true }, { "name": "bathymodel", "title": "Bathymetry model for Sandy Strait, Australia", "object": "bathymodel", "class": [ "stars" ], "fields": [], "table": true, "tojson": false }, { "name": "flatback", "title": "Flatback turtle tracking data", "object": "flatback", "class": [ "data.frame" ], "fields": [ "id", "DateTime", "x", "y" ], "rows": 1020, "table": true, "tojson": true }, { "name": "SandyStrait", "title": "A map of Sandy Strait, Australia", "object": "SandyStrait", "class": [ "data.frame" ], "fields": [ "long", "lat", "order", "hole", "piece", "group", "id" ], "rows": 3847, "table": true, "tojson": true }, { "name": "tidalplane", "title": "Tidal plane table for Sandy Strait, Australia", "object": "tidalplane", "class": [ "data.frame" ], "fields": [ "secondary.port", "standard.port", "lat", "lon", "datumDiff", "timeDiff" ], "rows": 2, "table": true, "tojson": true }, { "name": "tidedata", "title": "Tidal data for Sandy Strait, Australia", "object": "tidedata", "class": [ "data.frame" ], "fields": [ "tideDT", "reading", "standard.port" ], "rows": 26351, "table": true, "tojson": true }, { "name": "turtle", "title": "Green turtle tracking data", "object": "turtle", "class": [ "data.frame" ], "fields": [ "id", "lat", "lon", "DateTime", "qi" ], "rows": 429, "table": true, "tojson": true }, { "name": "turtle2", "title": "Green turtle tracking data 2", "object": "turtle2", "class": [ "data.frame" ], "fields": [ "id", "lat", "lon", "DateTime", "qi" ], "rows": 276, "table": true, "tojson": true }, { "name": "ud_matrix", "title": "A matrix containing probability distributions of flatback turtles", "object": "ud_matrix", "class": [ "matrix", "array" ], "fields": {}, "rows": 15, "table": true, "tojson": true }, { "name": "ud_raster", "title": "A list of raster data containing probability distributions of flatback turtles", "object": "ud_raster", "class": [ "list" ], "fields": [], "table": true, "tojson": false } ], "_help": [ { "page": "asymptote", "title": "Horizontal asymptotes of rational functions", "topics": [ "asymptote" ] }, { "page": "Australia", "title": "A map of Australia", "topics": [ "Australia" ] }, { "page": "bathymodel", "title": "Bathymetry model for Sandy Strait, Australia", "topics": [ "bathymodel" ] }, { "page": "boot_area", "title": "Cumulative analysis of collective areas by bootstrapping", "topics": [ "boot_area" ] }, { "page": "boot_overlap", "title": "Bootstrap overlaps between Utilisation Distributions (UDs)", "topics": [ "boot_overlap" ] }, { "page": "combn_overlap", "title": "Quantifying overlaps between all possible combination of Utilisation Distributions (UDs)", "topics": [ "combn_overlap" ] }, { "page": "ddfilter", "title": "Filter locations using a data driven filter", "topics": [ "ddfilter" ] }, { "page": "ddfilter_loop", "title": "Filter locations by quality index, inner angle, and speed", "topics": [ "ddfilter_loop" ] }, { "page": "ddfilter_speed", "title": "Filter locations by speed", "topics": [ "ddfilter_speed" ] }, { "page": "depthfilter", "title": "Filter locations by water depth", "topics": [ "depthfilter" ] }, { "page": "distfilter", "title": "Filter locations by distance", "topics": [ "distfilter" ] }, { "page": "dupfilter", "title": "Filter temporal and/or spatial duplicates", "topics": [ "dupfilter" ] }, { "page": "dupfilter_exact", "title": "Filter temporally and spatially exact duplicates", "topics": [ "dupfilter_exact" ] }, { "page": "dupfilter_qi", "title": "Filter temporal duplicates by quality index", "topics": [ "dupfilter_qi" ] }, { "page": "dupfilter_space", "title": "Filter spatial duplicates", "topics": [ "dupfilter_space" ] }, { "page": "dupfilter_time", "title": "Filter temporal duplicates", "topics": [ "dupfilter_time" ] }, { "page": "flatback", "title": "Flatback turtle tracking data", "topics": [ "flatback" ] }, { "page": "percent_vol", "title": "UD percent volume", "topics": [ "percent_vol" ] }, { "page": "SandyStrait", "title": "A map of Sandy Strait, Australia", "topics": [ "SandyStrait" ] }, { "page": "tidalplane", "title": "Tidal plane table for Sandy Strait, Australia", "topics": [ "tidalplane" ] }, { "page": "tidedata", "title": "Tidal data for Sandy Strait, Australia", "topics": [ "tidedata" ] }, { "page": "to_map", "title": "Plot location data on a map", "topics": [ "to_map" ] }, { "page": "track_param", "title": "Calculate parameters between locations", "topics": [ "track_param" ] }, { "page": "turtle", "title": "Green turtle tracking data", "topics": [ "turtle" ] }, { "page": "turtle2", "title": "Green turtle tracking data 2", "topics": [ "turtle2" ] }, { "page": "ud_matrix", "title": "A matrix containing probability distributions of flatback turtles", "topics": [ "ud_matrix" ] }, { "page": "ud_raster", "title": "A list of raster data containing probability distributions of flatback turtles", "topics": [ "ud_raster" ] }, { "page": "vmax", "title": "Maximum linear speed", "topics": [ "vmax" ] }, { "page": "vmaxlp", "title": "Maximum one-way linear speed of a loop trip", "topics": [ "vmaxlp" ] } ], "_readme": "https://github.com/takahiroshimada/sdlfilter/raw/HEAD/README.md", "_rundeps": [ "abind", "askpass", "bitops", "class", "classInt", "cli", "cpp11", "crayon", "curl", "data.table", "DBI", "digest", "dplyr", "e1071", "emmeans", "estimability", "farver", "generics", "geosphere", "ggmap", "ggplot2", "ggspatial", "glue", "gridExtra", "gtable", "hms", "httr", "isoband", "jpeg", "jsonlite", "KernSmooth", "labeling", "lifecycle", "lubridate", "magrittr", "maps", "MASS", "mime", "mvtnorm", "numDeriv", "openssl", "pillar", "pkgconfig", "plyr", "png", "pracma", "prettyunits", "progress", "proxy", "purrr", "R6", "RColorBrewer", "Rcpp", "rlang", "rosm", "s2", "S7", "scales", "sf", "stars", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "timechange", "units", "utf8", "vctrs", "viridisLite", "withr", "wk" ], "_score": 3.7993405494535817, "_indexed": true, "_nocasepkg": "sdlfilter", "_universes": [ "takahiroshimada" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.3.3", "date": "2026-05-22T18:57:21.000Z", "distro": "noble", "commit": "82e483a7e936ffecbb1ca96a20fe3aa5eb7f7687", "fileid": "6eb4a310f8e9856b302b2b667c44d300edf3d8a55a7e91bd618848890e4ac396", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/takahiroshimada/actions/runs/26273384034" }, { "r": "4.6.0", "os": "linux", "version": "2.3.3", "date": "2026-05-22T18:57:25.000Z", "distro": "noble", "commit": "82e483a7e936ffecbb1ca96a20fe3aa5eb7f7687", "fileid": "2e15e9cd467f5b9650dcb39db23ae4549aa39eada98f9b48d4a4e0446fd24e6b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/takahiroshimada/actions/runs/26273384034" }, { "r": "4.5.3", "os": "mac", "version": "2.3.3", "date": "2026-05-22T19:02:56.000Z", "commit": "82e483a7e936ffecbb1ca96a20fe3aa5eb7f7687", "fileid": "cb6b71e815e8c5b34f661e4c5c7e507bc07535f6654bc1e7727a884adb291783", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/takahiroshimada/actions/runs/26273384034" }, { "r": "4.6.0", "os": "mac", "version": "2.3.3", "date": "2026-05-22T19:05:30.000Z", "commit": "82e483a7e936ffecbb1ca96a20fe3aa5eb7f7687", "fileid": "e57096f2fa7b8c80796dd2b22b4d799c43a26b18485c10fd564d0af8427d4b02", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/takahiroshimada/actions/runs/26273384034" }, { "r": "4.6.0", "os": "wasm", "version": "2.3.3", "date": "2026-05-22T18:57:15.000Z", "commit": "82e483a7e936ffecbb1ca96a20fe3aa5eb7f7687", "fileid": "bd6130792f466eb2d63dec91736d5666fb174b0ca1120788f2dd4cc0bde5c2aa", "status": "success", "buildurl": "https://github.com/r-universe/takahiroshimada/actions/runs/26273384034" }, { "r": "4.7.0", "os": "win", "version": "2.3.3", "date": "2026-05-22T18:56:36.000Z", "commit": "82e483a7e936ffecbb1ca96a20fe3aa5eb7f7687", "fileid": "dbc24cf6139eff4134b2fd962fdd6d17515fa9b758bae9ed298a2789e1f5107e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/takahiroshimada/actions/runs/26273384034" }, { "r": "4.5.3", "os": "win", "version": "2.3.3", "date": "2026-05-22T18:56:08.000Z", "commit": "82e483a7e936ffecbb1ca96a20fe3aa5eb7f7687", "fileid": "3844a8000940a1b2eca575cc4ddb20178298894e7b11d0b7a4895a07e088d121", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/takahiroshimada/actions/runs/26273384034" }, { "r": "4.6.0", "os": "win", "version": "2.3.3", "date": "2026-05-22T18:56:14.000Z", "commit": "82e483a7e936ffecbb1ca96a20fe3aa5eb7f7687", "fileid": "d5d080e9d54af31f5a322c1298213546356b2aabc32fbd5abde7929b4522057b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/takahiroshimada/actions/runs/26273384034" } ] }